meld.system.builders.amber.subsystem.AmberSubSystemFromPdbFile ============================================================== .. currentmodule:: meld.system.builders.amber.subsystem .. autoclass:: AmberSubSystemFromPdbFile :members: :show-inheritance: .. automethod:: __init__ .. rubric:: Methods .. autosummary:: ~AmberSubSystemFromPdbFile.__init__ ~AmberSubSystemFromPdbFile.add_bond ~AmberSubSystemFromPdbFile.add_disulfide ~AmberSubSystemFromPdbFile.add_frcmod_file ~AmberSubSystemFromPdbFile.add_lib_file ~AmberSubSystemFromPdbFile.add_prep_file ~AmberSubSystemFromPdbFile.generate_tleap_input ~AmberSubSystemFromPdbFile.prepare_for_tleap ~AmberSubSystemFromPdbFile.set_rotation ~AmberSubSystemFromPdbFile.set_translation